Publications

 

Full List

Artificial intelligence-based analytics for diagnosis of small bowel enteropathies and black box feature detection.
Syed, S., Ehsan, L., Shrivastava, A., Sengupta, S., Khan, M., Kowsari, K., Guleria, S., Sali, R., Kant, K., Kang, S.J., Sadiq, K., Iqbal, N., Cheng, L., Moskaluk, C., Kelly, P., Amadi, B., Syed, A., Moore, S., Brown, D.
Journal of Pediatric Gastroenterology and Nutrition 72, no. 6 (2021) 833-841.

Deep Learning for Whole-Slide Tissue Histopathology Classification - A Comparative Study in the Identification of Dysplastic and Non-Dysplastic Barrett’s Esophagus.
Sali, R., Moradinasab, N., Guleria, S., Ehsan, L., Fernandes, P., Shah, T.U., Syed, S. and Brown, D.E.,
Journal of Personalized Medicine 10, no. 4 (2020) 141.

Deep learning methods for anatomical landmark detection in video capsule endoscopy images.
Adewole, S., Yeghyayan, M., Hyatt, D., Ehsan, L., Jablonski, J., Copland, A., Syed, S. and Brown, D.,
Proceedings of the Future Technologies Conference, pp. 426-434. Springer, Cham, 2020.

CoMixMatch - Semi-supervised Detection of Pancreatic Cancer on Noisy, Gigapixel Histology Images
Pulido, J.V., Syed, S. and Brown, D.E.,
2021 BIOIMAGING.

Advancing Eosinophilic Esophagitis Diagnosis and Phenotype Assessment with Deep Learning Computer Vision.
William Adorno, I.I.I., Catalano, A., Ehsan, L., von Eckstaedt, H.V., Barnes, B., McGowan, E., Syed, S. and Brown, D.E.,
2021 BIOIMAGING. (Best Paper Award)

HistoTransfer - Understanding Transfer Learning for Histopathology.
Sharma, Y., Ehsan, L., Syed, S. and Brown, D.E.
2021 IEEE International Conference on Biomedical and Health Informatics (BHI-21). (Best Paper Award)

Cluster-to-Conquer - A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification
Sharma, Y., Shrivastava, A., Ehsan, L., Moskaluk, C.A., Syed, S. and Brown, D.E.
2021 MIDL.

Semi-Supervised Classification of Noisy, Gigapixel Histology Images.
Pulido, J.V., Guleria, S., Ehsan, L., Fasullo, M., Lippman, R., Mutha, P., Shah, T., Syed, S. and Brown, D.E.
2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE), pp. 563-568. IEEE.

Screening for Barrett’s Esophagus with Probe-Based Confocal Laser Endomicroscopy Videos.
Pulido, J.V., Guleriai, S., Ehsan, L., Shah, T., Syed, S. and Brown, D.E.
2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) (pp. 1659-1663). IEEE.

Hierarchical deep convolutional neural networks for multi-category diagnosis of gastrointestinal disorders on histopathological images.
Sali, R., Adewole, S., Ehsan, L., Denson, L.A., Kelly, P., Amadi, B.C., Holtz, L., Ali, S.A., Moore, S.R., Syed, S. and Brown, D.E.
2020 IEEE International Conference on Healthcare Informatics (ICHI), pp. 1-6. IEEE.

HMIC: Hierarchical Medical Image Classification, A Deep Learning Approach
Kowsari, K., Sali, R., Ehsan, L., Adorno, W., Ali, A., Moore, S., Amadi, B., Kelly, P., Syed, S. and Brown, D.E.
Information 11, no. 6 (2020) 318.

Self-Attentive Adversarial Stain Normalization
Shrivastava, A., Adorno, W., Sharma, Y., Ehsan, L., Ali, S.A., Moore, S.R., Amadi, B., Kelly, P., Syed, S. and Brown, D.E.
International Conference on Pattern Recognition, pp. 120-140. Springer, Cham, 2021.

Deep Learning for Visual Recognition of Environmental Enteropathy and Celiac Disease
Shrivastava, A., Kant, K., Sengupta, S., Kang, S.J., Khan, M., Ali, S.A., Moore, S.R., Amadi, B.C., Kelly, P., Brown, D.E. and Syed, S.
2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI) (pp. 1-4). IEEE.

Artificial intelligence applied to gastrointestinal diagnostics: a review
Patel, V., Khan, M.N., Shrivastava, A., Sadiq, K., Ali, S.A., Moore, S.R., Brown, D.E. and Syed, S.
Journal of pediatric gastroenterology and nutrition, 70(1), pp.4-11.

Assessment of machine learning detection of environmental enteropathy and celiac disease in children
Syed, S., Al-Boni, M., Khan, M.N., Sadiq, K., Iqbal, N.T., Moskaluk, C.A., Kelly, P., Amadi, B., Ali, S.A., Moore, S.R. and Brown, D.E.
JAMA network open, 2(6), pp.e195822-e195822.

CeliacNet: Celiac Disease Severity Diagnosis on Duodenal Histopathological Images Using Deep Residual Networks
Sali, R., Ehsan, L., Kowsari, K., Khan, M., Moskaluk, C.A., Syed, S. and Brown, D.E.
arXiv preprint arXiv:1910.03084.

Diagnosis of celiac disease and environmental enteropathy on biopsy images using color balancing on convolutional neural networks
Kowsari, K., Sali, R., Khan, M.N., Adorno, W., Ali, S.A., Moore, S.R., Amadi, B.C., Kelly, P., Syed, S. and Brown, D.E.
Proceedings of the Future Technologies Conference (pp. 750-765). Springer, Cham.

Mo1992–Solving the Stain Dilemma: Computational Image Analysis to Address Differential Tissue Staining Color Bias in Duodenal Biopsies
Sana Syed, Aman Shrivastava, Karan Kant, Saurav Sengupta, Luke Kang, Marium N Khan, Najeeha T Iqbal, Kamran Sadiq, Christopher A Moskaluk, Beatrice Amadi, Paul Kelly, Asad Ali, Sean Moore, Donald Brown
Gastronenterology

Deep Learning for Detecting Diseases in Gastrointestinal Biopsy Images
Aman Srivastava, Saurav Sengupta, Sung-Jun Kang, Karan Kant, Marium Khan, S Asad Ali, Sean R Moore, Beatrice C Amadi, Paul Kelly, Sana Syed, Donald E Brown
IEEE Xplore